Crohn’s disease and Ulcerative colitis
Crohn’s Disease | Ulcerative Colitis | |
---|---|---|
Epidemiology | Younger people Smokers – 3-4 times more common Racial preference: Jewish & Caucasian | Younger people Non-smokers – smoking seems protective for UC (many patients with UC may present after smoking cessation) |
age | Peak onset: 15-30 years Can also present in children – FFT and also in those in their 60’s | First peak onset 15-25 years (up to age 40 years) Second peak onset > 50 years |
Risk factors | Tobacco Abuse Oral Contraceptives Antibiotics Frequent NSAIDs Urban environment1 o relative with Inflammatory Bowel Disease Minimal increased Colon Cancer risk (contrast with Ulcerative Colitis) | Specific Bacterial Gastroenteritis infections (Nontyphoid Salmonella, Campylobacter, ,Clostridioides difficile) Family History confers – Monozygotic twin: 95 fold increased risk Higher risk with refined sugar intake and soda intake, increased meat and fat intake |
Regions involved | Transmural disease (Granulomas) that may affect any part of the GIT Commonly – Terminal ileum & colon Can affect mouth to anus Skip lesions | Mucosal disease (no Granuloma)confined to the colon Begins at the rectum and Retrograde extension and Continuous Ulcerative Proctitis 🡪 Proctosigmoiditis 🡪 Pancolitis |
Clinical presentation | Adult (strongest associations first): Perianal lesions: fistulae Abscesses Strictures Weight loss in 3 months Abdominal pain >3 months Nocturnal diarrhea Fever Abdominal pain subsides for 30-45 minutes after meals No rectal urgency Mass often at the right lower quadrant (common) Obstruction (due to stricture, fistula, or abscess) Child (strongest associations first): Anemia Hematochezia Weight loss Vitamin malabsorption Malnutrition (common) Abdominal distension (common) Extra-intestinal symptoms (common) | Classic: Intermittent bloody diarrhea (most common presenting complaint) Rectal or fecal urgency Tenesmus Abdominal pain (often in the left lower quadrant) Fever Malaise Weight loss Additional features: No vitamin malabsorption (ileum typically not affected) Malnutrition (occasionally) Abdominal distension (if severe) Extra-intestinal symptoms (rare), such as primary sclerosing cholangitis (PSC) and thromboembolic events |
Extra-intestinal symptoms | extraintestinal findings are more common with Crohn’s Disease Joints: – migratory polyarthritis (5-21% of cases) – sacroiliitis – ank spon Skin: – erythema nodosum – pyoderma gangrenosa – Clubbing – Psoriasis – Aphthous Stomatitis, Aphthous Ulcers or Canker Sores (4%) Eyes: – Uveitis – episcleritis – iridocyclitis Liver: – Primary Sclerosing Cholangitis (4-5% co-Incidence) – Hepatic Steatosis – Cholelithiasis Autoimmune: – celiac – thyroid Bones : – osteopenia/osteoporosis – osteomalacia Blood : – anaemia Rare (bronchitis, bronchiectasis, other lung disease, hyperhomocysteinemia, pancreatitis, renal stones, thromboembolism, PSC, cholelithiasis, nephrolithiasis) | |
Investigations | Bloods: – CRP: shown to correlate with clinical, endoscopic and histologic disease activity persistent elevation is associated with a higher relapse rate and better response to infliximab anemia of chronic disease (normocytic, normochromic) – ESR – WCC – hypoalbuminemia – pANCA +ve 🡪 UC – ASCA +ve 🡪 CD Other: – IS, Mg, B12 (absorption issues), LFT & INR, Coeliac Ab Stool cultures: – to r/o infective causes – Faecal Calprotectin Imaging: – AXR: string sign (due to hypertrophy of intestinal wall narrowing of GIT) – Abdo USS or CT scan (regions of narrowing & dilation) – CT enteroclysis – contrast is infused via a nasogastric tube – MRI – Colonoscopy & biopsy – never perform in acute presentation/ flare 🡪 +++ pain & risk of perforation Barium enema: – cobble stone, rose thorn ulcers, colon strictures & proximal dilation – now rarely used in IBD and has been replaced by colonoscopy | |
Complications | Obstruction Fistula Perforation Peritonitis Perianal disease – fissures, fistulas, skin tags, ulcers Other: Cancer (but less common than in UC), Malabsorption | Cancer +++ (increased with duration of UC, extent of UC, concurrent PSC, persistent mucosal inflammation, dysplasia Toxic mega colon (rare) |

Faecal Calprotectin

- Faecal Calprotectin
- Protein complex formed by S100A8 and S100A9, both members of the S100 family of calcium-binding proteins.
- Binds zinc and calcium, enabling structural changes and biological activity.
- Referred to as calprotectin due to its calcium-binding and protective immune functions.
Cellular Origin and Abundance - Highly abundant in neutrophils, comprising ~60% of total cytosolic protein in these cells.
- Also found in monocytes, macrophages, and epithelial cells, but to a lesser extent.
Role in Inflammation and Immunity - Released extracellularly during neutrophil activation or cell death.
- Acts as a biomarker of neutrophilic inflammation, particularly in mucosal surfaces like the GI tract.
- Prominent role in diseases like inflammatory bowel disease (IBD) and rheumatic diseases.
Clinical Utility of Faecal Calprotectin
Diagnostic Role
- Non-invasive biomarker to differentiate:
- Organic GI disease (e.g., IBD, infections, neoplasia) → elevated levels.
- Functional GI disorders (e.g., IBS) → normal levels.
- Helps reduce unnecessary endoscopies.
Monitoring Role
- Tracks disease activity in IBD (Crohn’s, ulcerative colitis).
- Can help predict relapse and assess mucosal healing.
- Useful in therapy response monitoring.
Sample Analysis
- Expressed as μg/g of faeces.
- Stable in stool samples stored up to 7 days at 2–8°C.
Reference Intervals (Adults)
Concentration | Interpretation |
---|---|
<50 μg/g | IBD unlikely (but not excluded) |
50–100 μg/g | Possible IBD or other inflammation (infection, coeliac, diverticulitis) |
>100 μg/g | Strongly suggestive of IBD or significant inflammation |
- Note: Calprotectin increases with age. Use caution interpreting borderline results in elderly.
- For individuals under longitudinal follow-up, use patient as their own baseline reference.
Paediatric Considerations
- Faecal calprotectin levels are naturally higher in infants and young children.
- Neonates and preterms show variable levels (fall then rise post-birth).
- Cut-offs in paediatrics not well-established — interpret using serial monitoring over time.
- Studies show:
- Age <6 months: much higher baseline calprotectin.
- Gradual decline with age; by ~4 years, levels begin to approximate adult RIs.
Conditions Associated with Elevated Faecal Calprotectin
Inflammatory | Infective/Malignancy | Drug-induced |
---|---|---|
IBD (Crohn’s, UC) | GI infections | NSAIDs |
Coeliac disease | GI malignancy | Proton pump inhibitors |
Diverticular disease | ||
Necrotising enterocolitis |
- Sensitivity and specificity are increased when combined with CRP.
Limitations
- Not IBD-specific — elevated in many inflammatory and non-inflammatory conditions.
- Mild elevations can be non-specific.
- False positives: NSAIDs, PPIs, infections.
- Must be interpreted in clinical context.


Clinical Summary
- Safe, reliable, and non-invasive tool in gastroenterology.
- Particularly valuable for:
- Triage of diarrhoeal illness.
- Monitoring IBD.
- Minimising invasive investigations when appropriate.
- Must be interpreted with patient history, other labs, and imaging findings.
MBS as of 1 November 2021
MBS Item 66522 – Initial Faecal Calprotectin Test
Initial assessment for inflammatory bowel disease (IBD) in patients with persistent gastrointestinal symptoms.
Eligibility Criteria (All must apply):
- Patient is <50 years of age.
- Has gastrointestinal symptoms suggestive of IBD or functional bowel disease for >6 weeks.
- Infectious causes have been excluded.
- Likelihood of malignancy is low.
- No clinical alarm features present (e.g. GI bleeding, weight loss, anaemia, family history of CRC).
Notes:
- Only one rebateable test under this item unless criteria for 66523 are met.
- Aimed at reducing unnecessary endoscopy referrals in younger patients.
MBS Item 66523 – Follow-up Faecal Calprotectin Test
Purpose:
Second-line test when the result of item 66522 is inconclusive (50–100 μg/g).
Eligibility Criteria (All must apply):
- Initial faecal calprotectin result was 50–100 μg/g.
- Ongoing gastrointestinal symptoms suggesting IBD or functional bowel disease.
- Test is requested by a gastroenterologist (specialist or consultant physician).
- Request must state that endoscopy is not initially required.
- No clinical alarm features present.
Notes:
- Helps avoid premature endoscopy when initial result is borderline.
- Allows better triage and monitoring in primary care before specialist referral.
Treatment
- The main goals of treatment for ulcerative colitis are to:
- Control symptoms (achieve remission)
- Prevent symptoms from coming back (maintain remission)
- Smoking cessation
- Strongly associated with negative disease outcomes in CD.
- Cessation should be actively encouraged and awareness of available help and resources given
- Anti-inflammatories
- Aminosalicylates (5-ASA) – Local colonic anti-inflammatory effects
- eg. Sulfasalazine, mesalazine
- for induction and maintenance of remission in mild to moderate UC
- Corticosteroids – Binds to intracellular receptors and modulates expression of multiple pro-inflammatory genes
- to induce remission
- Aminosalicylates (5-ASA) – Local colonic anti-inflammatory effects
- Immunosuppressants/ immunomodulators
- Azathiopurine – Decrease DNA replication in highly proliferative cells, including lymphocytes
- for refractory disease/ frequent relapses
- Methotrexate
- TNF α inhibitors – Immunoglobulins that neutralise soluble and membrane-bound TNF, a pleotropic pro-inflammatory cytokine
- Infliximab – Remicade
- Adalimumab – Humira
- Azathiopurine – Decrease DNA replication in highly proliferative cells, including lymphocytes
- Given the risks of infection, vaccination and screening have become important issues in IBD
- screening for
- tuberculosis
- hepatitis B infection
- VZV
- HIV
- MMR
- Syphilis
- screening for
before initiating therapy
- advice regarding travel (eg. avoid travelling to areas where tuberculosis is endemic if taking an anti-TNF agent).
- Vaccinate all with necessary non-live vaccines
- Influenza vaccination
- Pneumococcus
- Covid
- Live vaccinations should not be given if receiving thiopurines, biologics or corticosteroids long term
- BCG (bacille Calmette–Guérin) vaccine.
- Some Japanese encephalitis virus vaccines.
- MMR (measles-mumps-rubella) vaccine.
- rotavirus vaccine.
- oral typhoid vaccine.
- varicella vaccine.
- yellow fever vaccine.
- zoster vaccine (Zostavax)

- Employment
- The ACCESS report revealed over three-quarters of patients noticed a change in work life as a result of IBD.
- This included time off, restriction of duties, travel restriction and loss of income
- Education
- Similar findings to above, as well as a lack of understanding or not being believed about their illness
- Quality of life
- Many studies have shown a lower quality of life in IBD patients and this has been associated with disease activity
- Diet
- eating a well-balanced, nutritious diet
- keep a healthy body weight.
- certain foods seem to make symptoms worse. For example, some people feel better if they avoid dairy foods like milk, yogurt, and cheese, while others may find that it helps to adhere to a low-fiber diet
- Anaemia
- Common in IBD and often multifactorial.
- Iron deficiency is common and responds poorly to oral iron.
- Intravenous iron is particularly useful in this situation
- Psychological health
- Stress, depression and poor psychological health are associated with chronic disease and increased disease activity.
- Many new psychological therapies may help, although evidence on the use of antidepressants is conflicting
- Sexual dysfunction
- The potential for incontinence and wind, and a resistance to discuss sexual health concerns makes these issues common and challenging
- Functional GI symptoms
- Common in IBD and require careful assessment.
- Dietary interventions (via a specialist dietician) have proven useful
- Nutrition and development
- Key priorities in all patients, but should be particularly focused on children, adolescents and young adults
- Check iron, vitamin B12 and folate
- Replace to normal range.
- 2–5 mg daily of folate is needed in the setting of extensive ileal disease, in those on a fibre-restricted diet and in those taking sulfasalazine
- Contraception
- Preference for long-acting, non–oestrogen containing contraception in patients with active IBD, given the theoretical risk of venous thromboembolism.
- Education that there is no increased risk of IBD flare with the use of oral contraceptives.
- Reassurance that absorption of oral contraceptives is maintained in those with mild UC or short ileal resections.
- Recommendation for non-oral contraceptives in the setting of prior extensive small bowel resection or active small bowel inflammatory disease
- IBD Activity review
- Three months of corticosteroid-free remission
- Clinical (assess symptoms)
- Biochemical aim for
- faecal calprotectin <100–250 μg/g
- normalisation of C-reactive protein
- Quiescent disease on cross-sectional imaging if available (intestinal ultrasonography, magnetic resonance imaging)
- Endoscopic assessment may be warranted if there is discrepancy between clinical symptoms and biochemical or radiological assessment.
- In pregnancy
Medication | Male fertility | Female fertility | Pregnancy | Commencement for management of flare in pregnancy* | Breastfeeding |
Aminosalicylates | Switch to an alternative three months prior to conception attempts | Continue, but use 5 mg daily of folic acid with sulfasalazine | Continue, but use 5 mg daily of folic acid with sulfasalazine | For mild-to-moderate flare of UC. Can commence or dose escalate both topical (enemas or suppositories) and oral formulations. | Continue, but use 5 mg daily of folic acid with sulfasalazine prior to and during pregnancy. Avoid sulfasalazine in breastfeeding. |
Thiopurines | Continue | Continue | Continue | Not recommended | Continue |
Methotrexate | Continue | Cease at least three months prior to conception | Contraindicated | Contraindicated | Contraindicated |
Corticosteroids | Continue | Aim for three months corticosteroid-free remission prior to conception | Avoid prolonged (>6 week) courses or use as a maintenance agent | For moderate-to-severe UC and CD flares, or if inadequate response to aminosalicylates. Commence prednisolone 40 mg daily, weaning by 5 mg weekly, with early gastroenterology assessment. Budesonide controlled release may be trialled.* Avoid prolonged (>6 week) courses and monitor for side effects (glucose intolerance, psychiatric). | Continue at doses <40 mg prednisolone daily |
Anti-TNF biologics | Continue | Continue | Continue throughout pregnancy10 | For moderate-to-severe flares of UC and CD; can be commenced in pregnancy with specialist supervision. | Continue |
Ustekinumab | Continue | Continue | Continue throughout pregnancy10 | Minimal safety data for induction available. | Continue |
Vedolizumab | Continue | Continue | Continue throughout pregnancy10 | Minimal safety data for induction available. | Continue |
Tofacitinib | Continue | Cease at least four weeks prior to trying to conceive | Contraindicated | Contraindicated | Contraindicated |