IMMUNOLOGY

Non-IgE mediated food allergy

Key Points

  • Non-IgE-mediated food allergies are delayed, cell-mediated immune reactions to specific food proteins.
  • Diagnosis is clinical, based on a detailed history and symptom resolution after elimination, as allergy testing (e.g. skin prick or serum IgE) is not helpful.
  • Management involves strict elimination of the offending food(s); adrenaline and antihistamines are not indicated, as these reactions are non-anaphylactic.
  • FPIES (Food Protein-Induced Enterocolitis Syndrome) is a severe variant that can result in vomiting, dehydration, shock, and may require acute medical intervention.

Background

Epidemiology

  • Prevalence: ≈ 2 % of Australian/NZ infants (≈ 1 in 50).
  • Natural history: ~80 % develop tolerance by 3-5 y; minority remain lifelong.

Food allergies are classified (https://www.rch.org.au/clinicalguide/guideline_index/Non-IgE_mediated_food_allergy/) into:

  • IgE-mediated: Rapid onset (typically <60 minutes), involving urticaria, angioedema, bronchospasm, or anaphylaxis.
  • Non-IgE-mediated: Delayed onset (hours to days), typically gastrointestinal.
  • Mixed IgE and non-IgE: e.g. eosinophilic oesophagitis, atopic dermatitis.
  • Non-IgE-mediated food allergies typically present in infancy and often resolve by 3–5 years of age.
  • The gastrointestinal tract is the primary site of involvement.

Terminology and Clinical Subtypes

1. Food Protein-Induced Allergic Proctocolitis (FPIAP)

  • Pathophysiology: Delayed-type hypersensitivity reaction affecting the rectum and distal colon.
  • Typical presentation:
    • Onset in the first few months of life.
    • Blood-streaked and/or mucousy stools.
    • Infant appears well and thriving.
  • Management: Maternal dietary elimination if breastfed; switch formula to extensively hydrolysed or amino acid-based if formula-fed.

2. Food Protein-Induced Enteropathy

  • Pathophysiology: Chronic inflammatory response affecting the small intestine.
  • Typical presentation:
    • Persistent loose stools, vomiting, poor weight gain, and irritability.
    • May develop secondary lactose intolerance, causing bloating and peri-anal excoriation.
  • Diagnosis: Clinical response to elimination and symptom recurrence on re-challenge.

3. Food Protein-Induced Enterocolitis Syndrome (FPIES)

  • Pathophysiology: Delayed, profound gastrointestinal hypersensitivity reaction.
  • Typical presentation:
    • Onset 2–4 hours after ingesting trigger food.
    • Repetitive vomiting, lethargy, pallor, and sometimes diarrhoea.
    • Risk of hypovolaemia and shock in severe cases.
  • Common triggers (Australia): Cow’s milk, soy, rice, oats. Can be triggered by any food.
  • Management: Elimination of trigger food; acute episodes may require IV fluids and ondansetron.

Position of Cow’s-Milk Allergy within the Non-IgE Terminology Sphere

Umbrella termPrecise diagnosis (pathophysiology)Typical age at presentationKey clinical featuresImmunologic mechanism
Cow’s-Milk Protein Allergy (CMPA)IgE-mediated immune response to casein/whey proteins

Infancy (<12 mo) most common
occasionally persists
timing:
15 min – 2 h

Urticaria
angio-oedema
vomiting
wheeze
anaphylaxis
Food-specific IgE
Non-IgE-mediated immune response to casein/whey proteinssee below
timing: ≥ 2 h (often > 4 h)

Eczema flares (but not acute hives)

protracted vomiting/diarrhoea

bloody or loose stools

faltering growth (FPE)

Skin involvement absent
T-cell mediated
Non-IgE-mediated CMPA subtypesFPIAP – Food-protein-induced allergic proctocolitis

FPE – Food-protein-induced enteropathy

FPIES – Food-protein-induced enterocolitis syndrome
FPIAP: first weeks–months of life

FPE: early infancy

FPIES: median 4–6 mo when solids introduced
See “Key non-IgE entities” belowDelayed (T-cell–dominated)
Cow’s-Milk Protein Intolerance (CMPI)Catch-all term often used in primary care to label any adverse reaction attributed to cow’s-milk ingestion when the exact mechanism is unconfirmedVariableNon-specific GI upset
eczema
reflux
loose stools etc.
May be immune (non-IgE) or non-immune (e.g. lactase deficiency, functional GI disorders)
  • CMPICow’s-Milk Protein Intolerance is an umbrella term still used by many clinicians, is not a formal diagnostic category in ASCIA or EAACI guidelines.
  • Historically used by paediatricians when infants improved on dairy-free formula but without formal testing.
  • The label therefore captured:
    • IgE mediated cow’s-milk protein allergy (CMPA)
    • Non-IgE CMPA (e.g. FPIAP/FPE) and
    • Non-immune disorders such as
      • transient lactase deficiency – patients tolerate lactose-free dairy proteins.
      • severe gastro-oesophageal reflux
      • functional diarrhoea
  • When an infant reacts to cow’s-milk formula, first ask “immune or non-immune?”
    • Immediate hives / wheeze: think IgE-CMPA.
    • Delayed GI-only features: likely non-IgE subtype (FPIAP/FPE/FPIES).

Key Non-IgE Entities Triggered by Cow’s-Milk Protein

  • Non-IgE-mediated allergies do not involve mast cell degranulation, hence no role for adrenaline or antihistamines
SubtypeLatency / AgeHallmark FeaturesManagement EssentialsPrognosis
FPIAP (Food-Protein-Induced Allergic Proctocolitis)Hours → days

First weeks–months
Well, thriving infant;

blood-streaked ± mucous stool
Maternal dairy elimination (breast-fed) or EH/AA formula> 90 % resolve by 12–18 mo
FPE (Food-Protein-Induced Enteropathy)Days → weeks (chronic)

Early infancy
Chronic loose stools, vomiting, poor weight gain, peri-anal excoriation; secondary lactose malabsorption commonDairy elimination; confirm on re-challenge if doubtMost resolve by 2–3 y
FPIES (Food-Protein-Induced Enterocolitis Syndrome)2–4 h post-ingestion;

onset when solids introduced (median 4–6 mo)
Repetitive profuse vomiting → pallor
lethargy
possible diarrhoea
risk of dehydration/shock
Strict avoidance
acute episode → IV fluids
±
ondansetron (not adrenaline)
Majority outgrow by 3–5 y

Differential diagnoses

Non-immune lactose disorders

  • Primary adult-type hypolactasia, secondary lactose malabsorption post-gastroenteritis. CMPA tests negative; tolerated lactose-free cow’s milk still contains proteins → will trigger CMPA. allergy.org.au

Other food hypersensitivities

  • Soy or egg FPIES/proctocolitis
  • Coeliac disease (IgA tTG-positive, villous atrophy)

Functional & reflux disorders

  • Infant colic, functional diarrhoea, GORD; symptoms improve with acid suppression or positional therapy, not elimination alone.

Infective or inflammatory GI disease

  • Viral/bacterial gastroenteritis, invasive enteritis
  • Early-onset IBD or eosinophilic colitis without clear allergen trigger

Surgical/acute abdominal causes

  • Pyloric stenosis, malrotation/volvulus, necrotising enterocolitis in preterms.

Systemic / metabolic mimics

  • Inborn errors (galactosaemia), immunodeficiencies, bleeding diatheses.

Assessment

  • History
    • Food exposure and timing of reaction (note food may have been ingested directly by the child or through maternal ingestion via breastmilk in FPIAP and enteropathy)
    • Has this food been eaten in past, how often, any prior reactions?
    • Details of reaction and duration
      • Vomiting
      • Diarrhoea
      • Stool description, including presence of mucous or blood
      • Delayed presentations of lethargy, pallor
      • Unsettled behaviour
      • Rash (morphology and duration)
    • Age at time of initial reaction, timing of other reactions
    • Dietary history: breastfeeding (noting any maternal dietary exclusions), formula (including types)
    • Growth trajectory, taking note of slow weight gain
    • Associated eczema
    • Infectious contacts
  • Examination
    • Assess for dehydration
    • Abdominal examination:
      • In non-IgE-mediated food allergy presentations, the abdomen should be soft and non-tender
      • Consider other causes for presentation if abdomen is distended or tender
      • Perianal examination for rash or fissures
    • Growth parameters: weight, length, head circumference
    • Skin:
      • assess for rashes, ie eczema
      • petechiae in the setting of bloody stools (consider thrombocytopenia), 
      • haemangiomas (may also be present in GI tract and present with rectal bleeding)

Summary of conditions

 ProctocolitisEnteropathyFPIES
Average age<6 months<6 months<12 months
VomitUsually not prominentMay be presentProfuse +++
StoolsBlood, mucous usually presentMucous +/- blood may be presentMay have loose stools
LethargyNoCan be presentCommon
PallorNoPossibleCommon
HivesNoNoNo
Eczema flareCommon (30-50 %)
Flares appear 4-24 h after exposure and may be the main clue in otherwise well infants.
Common (30-50 %)
Flares appear 4-24 h after exposure and may be the main clue in otherwise well infants.
Uncommon (can co-exist but not provoked by single episode)
Weight gainNot affectedCan be affectedRarely affected
Timing of reaction after ingestion>few hours-days>few hours -daysAverage 2-4 hours
Improvement of symptomsOver few days to weeks after eliminating trigger foodOver few days to weeks after eliminating trigger foodOnce vomiting ceases and fluids tolerated, improvement seen after few hours
Unsettled behavioursUsually not presentMay be presentNot a prominent feature
Common food triggersCow milk, soyCow milk, soyRice, oats, cow milk, soy, eggs
Less common food triggersOthers not commonOthers not commonAvocado, chicken, sweet potato, legumes (many others possible)
Differential diagnosesInfectious gastroenteritisEarly onset inflammatory bowel diseaseBleeding disorder Infectious gastroenteritisEarly onset inflammatory bowel diseaseCoeliac disease (if age > 6 months and child has started solids)Underlying immune-deficiency Infection (sepsis, meningitis, UTI, gastroenteritis) Pyloric stenosisIntussusceptionBowel obstruction (suspect with bilious vomiting) 
PrognosisExcellent; > 90 % resolve by 1–3 y.
Excellent; > 90 % resolve by 1–3 y.
50–80 % resolve by 3 y (milk/soy earlier, grains later).

Grading scales of the severity of Non-IgE-mediated gastrointestinal food allergies

Investigations

Routine Investigations

  • Not routinely required – diagnosis is clinical based on history and resolution of symptoms with food elimination.

When to Investigate Further

  • Persistent blood in stool:
    • Order FBE to assess for anaemia or thrombocytopaenia.
  • Presence of petechiae:
    • Urgent FBE to exclude thrombocytopenia.
  • Suspected infectious cause:
    • Consider stool MCS and viral PCR.

Allergy Testing

  • Skin prick testing and serum-specific IgE testing are not indicated for suspected non-IgE-mediated food allergy.
  • These tests do not contribute to diagnosis and may lead to inappropriate dietary restrictions.

Referral Consideration

  • If diagnostic uncertainty exists during acute presentation and allergy is suspected:
    Discuss with Allergy & Immunology team.

Management

1. Proctocolitis / Enterocolitis

  • Initial Management
    • Eliminate suspected food trigger.
    • If cow’s milk is suspected:
      → Advise maternal elimination of dairy if breastfeeding.
      → Clinical improvement may take up to 2 weeks.
    • If suboptimal or no improvement:
      → Consider eliminating soy, egg, wheat (one at a time).
      → Rarely require >2 eliminations – refer to dietitian if more are needed.
    • Breastfeeding mothers:
      → Recommend calcium supplementation if dairy/soy are excluded.
  • Formula-Fed Infants
    • Eliminate cow’s milk and soy protein.
    • Trial:
      • Extensively hydrolysed formula (EHF)
      • Rice-based formula (if available)
    • If no response after 2 weeks:
      → Trial amino acid-based formula (AAF) in consultation with a specialist.
    • Many EHFs are available OTC; AAF requires prescription.
    • If no improvement on AAF:
      → Reconsider diagnosis.
  • Monitoring
    • Ensure regular monitoring of growth and weight gain.

2. Food Reintroduction Strategy

  • Consider food reintroduction at ~12 months of age:
    • Reintroduce one food at a time every 2–3 weeks.
    • Graded cow’s milk challenge:
      1. Baked milk (e.g. in muffins)
      2. Hard cheese
      3. Yoghurt
      4. Fresh milk
    • If delayed symptoms recur:
      → Stop introduction, and retrial after a few months.
  • Most children outgrow symptoms by 1–2 years of age.

Food Protein-Induced Enterocolitis Syndrome (FPIES)

Acute Management

  • Hydration and antiemetics:
    • Ondansetron (oral):
      • 8–15 kg: 2 mg
      • 15–30 kg: 4 mg
      • 30 kg: 6–8 mg
  • Consider:
    • Fluid resuscitation
    • Correction of acid-base and electrolyte imbalances
    • Rule out sepsis if child is unwell or not improving.
    • Bilious vomiting: requires urgent surgical assessment.

Long-Term Management

  • Prior to discharge:
    • Provide FPIES Action Plan
    • Prescribe ondansetron (oral dispersible)
  • Recommend:
    • Oral food challenge to confirm trigger
    • Avoidance of identified food triggers
    • Referral to a paediatric allergist for supervised reintroduction
  • Prognosis:
    • Most resolve by 2–3 years of age

Referral Triggers

Refer to paediatrician, paediatric allergist or gastroenterologist if:

  • Poor or absent response to standard food eliminations.
  • Failure to thrive, persistent loose stools, or eczema unresponsive to elimination diet.
  • Suspect underlying immunodeficiency (e.g. SCID).

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